New answers tagged gif
I don't think there is any way to do this. If you open a transparent image from Video Frames To Layers it has white background but it has the frames, but if you just load it normally the transparency is there, but for 1 frame only.
You can make a video and then extract the frames from that video into individual images, then put each image into an animated gif software. It will make a GIF look just like the video it came from.
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